LOC_Os05g25840

Expression Profile

RGAP LOCUS ID LOC_Os05g25840
RAP-DB ID Os05g0323800
Function ELMO/CED-12 family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Mitochondrial
score 1.372

3) NUCPRED Prediction
localization Non Nuclear
score 0.23

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAGSW1
Function assigned as per literature OsAGSW1 plays an important role in seed shape and size of rice by regulating the number of external parenchyma cells and the development of vascular bundles
Subcellular localization as per literature chloroplasts
Cells used for localization experiment rice leaf protoplasts 
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25922483
Reference of localization https://academic.oup.com/jxb/article/66/19/5691/694979
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.112
NLS score 0.27
Protein Sequence >LOC_Os05g25840.3 protein
MAATAAAAGPASPAVSFSLPSPPLPRRADCRRGRGHGHRPRRGPPLLRAASTAAPPSSSPSSQSPGSLSIQLSPRASPPAAPTHVASLARDRAEDLQAES
RAMTRAAAATVFSPELLSSRYGSRPVKVALRAAEVVSKIGAFGLKVFLDEQRGQSSSAVRRARAVELRTILTRLGPTFVKIGQGLSTRPDLCPPEYLEEL
SELQDSLPTFPDEEAFACIERELGFPLDSIYSTISPSPIAAASLGQVYKARLKYSGQLVAVKVQRPGIEDIIGLDFYLLRGLGYLINKYVDFISSDVVAL
MDEFARRVYQELNYVQEGQNARRFKKLYADKQDVLVPDIFWDYTSAKVLTMEWIEGVKLNQQAAIEKQGLKVLDLVNIGIQCSLRQLLEYGYFHADPHPG
NILATPEGKLAFLDFGMMSETPEDARVAIIGHVVHMVNRDYEAMARDYYALDFLEPDVDVSPIVPALKSFFDDALNSTVSELNFKTIVDGLGAVLYQYPF
NVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLVQGSQDREFAAKDALQPVLKLLLGPDGE
ELRVLVVKEAVRVTEAITFGTLIDSYNAAPEFLKPLISSGNPAGPFKISDTEREQMIELRDRVFRIWGLLRSSDGFDPTILQPIVQVLQEPEARVLGSRV
AGGVTQRLAARLLQQLLRTPPAPGSP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term plastid
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term kinase activity
4
GO Category Biological Process
GO Term protein modification process
Presence of Splice variants YES