LOC_Os05g24160

Expression Profile

RGAP LOCUS ID

LOC_Os05g24160

RAP-DB ID

Os05g0307400

Function

double-stranded RNA binding motif containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

cyto

score

2) CELLO Prediction

localization

Nuclear

score

2.262

3) NUCPRED Prediction

localization

Non Nuclear

score

0.55

4) Y-Loc Prediction

localization

Nuclear

score

99.58

confidence value

0.54

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsDRB1-1

Function assigned as per literature

OsDRB1-1 plays a role in microRNA biogenesis

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

Nicotiana benthamiana leaves

NUCLEAR or Not Nuclear

NUCLEAR

PMID

25417716

Reference of localization

https://febs.onlinelibrary.wiley.com/doi/epdf/10.1111/febs.13159

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.133

NLS score

0.36

Protein Sequence

>LOC_Os05g24160.1 protein
MKKKSAPTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALM
EIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYI
VVPGKRVGKEVEKRPIETPKPLKAKKGGFKKKWNKRKFMKKDGQAVDVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIE
MVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEEAMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSM
AAPKALETIGKTLHSQYERWQPKARYKLQLDPTLEEV

GO Analysis

GO Category	Cellular comBiological Processonent
GO Term	nucleoplasm

GO Category	Biological Process
GO Term	response to endogenous stimulus

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	regulation of gene expression, epigenetic

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	protein binding

GO Category	Molecular Function
GO Term	RNA binding

Presence of Splice variants

YES