LOC_Os05g23670

Expression Profile

RGAP LOCUS ID LOC_Os05g23670
RAP-DB ID Os05g0302300
Function transcription factor jumonji, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.107

3) NUCPRED Prediction
localization Nuclear
score 0.93

4) Y-Loc Prediction
localization Nuclear
score 99.96
confidence value 0.96
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category Jumonji

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) JMJ704
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 7
Number of PAT7 2
Number of Bipartite 2
Basic residues % 0.117
NLS score 3.89
Protein Sequence >LOC_Os05g23670.1 protein
MVSSRDPGEEASAPPPPPPRRGEKRRMRGRTPSPEPASAPQDLCPSGACGDNVAGATTTNGKWHPHESYRPEIDDAPVFTPTEEEFKDPIRYITSIRPQA
EKYGICRIVPPSSWRPPCSLKEKNFWECTEFNTRVQQVDKLQNREPTKKKSQPRVQKKRKRRKRLRFGMTHRRPSANTSEDCADADEKFGFQSGSDFTLD
EFQKYADEFKQQYFGIKGSDEIPLSEIKKKKKNWQPSVDEIEGEYWRIVVCPTDEVEVDYGADLDTSMFSSGFSKLSSDSNRRDPYGLSCWNLNNLPRIP
GSVLSFETEDISGVVVPWLYVGMCFSSFCWHVEDHFLYSMNYMHFGEPKVWYGVPGADAVKLEEAMRKNLPRLFEEQPDLLHELVTQLSPSVLKSEGVPV
YRVVQNPGEFVLTLPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQCAVELYREQRRKTSISHDKLLLKTANEAVRQLWMNLSDCKSEQGVYRWQDTCGKDG
MLTSAIKTRVKMEKAARGGNMALRYKKMDGDYDSADRECFSCFYDLHLSAVSCQCSPNRFACLNHANILCSCEMDRKTALLRYTIEELHTLVAALEGDPT
AVYQWGQNDLGLVCPSGSTQYKKMDLGENTEFPDSATNVNHGCSLGSQDQYHYDPAKPAGYQQEKGIQIASEKHDKNKMVVNLESPATASNPSRSKSDCS
GSLSLNHSSELPSSRIQTGNSTLASITTEKLFGVDIKSNLAQSSDGQVSQLAKPSSSQTDEVSKPAIAKYTVELLDSGTMMIGKKWCNQQAIFPKGFKSR
VTFHSVLDPTRTCCYISEVLDAGLLGPLFRVTVEGLPEVSFTHTSPMQCWDSVRDRVNEEIAKQISFGKSGLPDFLSCNSLNGLEMFGFLSSPIIKEIEA
LDPCHQCLDYWLSRVSSVGTELPSESVMAAMVNDSTNPPIKLLGIEINRRESEQSSSFNNSCVRRSHLAGC

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No