LOC_Os05g14170

Expression Profile

RGAP LOCUS ID LOC_Os05g14170
RAP-DB ID Os05g0230600
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 1.507

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.25
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RFC3
Function assigned as per literature RFC3 is indispensable as a scaffold protein for the assembly of the RFC complex
Subcellular localization as per literature Mitochondria
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26781807
Reference of localization https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.13824
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.1
NLS score -0.47
Protein Sequence >LOC_Os05g14170.1 protein
MAPPRHLLLLLLLGFLAAASLAFTLTAAVYEDQVGLADWHQKYIGKVKQAVYHSQKSGRRRVVVLTEENVIASLDLRSGDIFWRHVIEKNDPVDELSLSL
GKYVVTLSSGGSILRAWNLPDGQMIWETNLQVSKSSKPLLHVLSNNKVAKDNLVFVLAGRWIYAVSSIDGVISWGKEFSLDGLDLKQIIQSPENDIVYAV
GLAGSSKLNLYQLNAKTGETVKHIQESFPIALCGETILGSHNVLVALDETRSDLFLIELKGESISYNKVHISDLVQDLSGTVKLLPLMSNGVIALQASST
VSLLKLKGIDGLEVIQSFEQPAAVSDALTITEKDEAFAVVQHTGSEIEFVVKFTSDVTGEVIREKINIDQHRGNIQKVFLNNYIRTDKSHGFRALVVMED
HSLLLVQQGEVVWSREDGLASIVDVTTSELPIEKDGVSVANVEHNLFEWLKGHMLKLKGTLMLANADELAAIQAMRLKSSEKNKMTRDHNGFRKLLIVLT
KAGKVIALHTGDGRIIWSNLLQSLRSSKSGEMPSALRICQWQVPHHRVMHENPSILIIGRSGADSAAPGVLSVLDSYSGEELNSLKLDHSVVQIIPLTVK
DSSEHRLQLIVDSHSRAHLYPRSPDAMNVFLHEMPNTYLYTVDIETNVIRGHSLQKSCDNSADEYCFSTKELWSIVFPSDTERIAISETRKMNEVVHAQA
KIIADQDVMYKYLSKNLVFVATVSPKASGEIGSAAPEEAWLVAYLIDAVTGRILHRVTHHGAQGPVHAVVSENWVVYHYFNLRAHRFEMAVIEIYDQSRA
DNKDVMKLILGKHNLSAPTTSYTRPEVMVKSQSYFFTFSVKAIAATQTAKGITSKQLLIGTIGDQVLALDKRFVDPRRSVNPTQQEKEEGIIPLTDALPI
IPTSYLTHSLQVEALRGIVSIPSKLESTTLVFTYGVDLFYTQLAPSRTYDSLTDEFSYALLLITIAALVAAIVVTWIWSEKKELRDKWR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term vacuole
3
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No