| RGAP LOCUS ID |
LOC_Os05g12260 |
| RAP-DB ID |
Os05g0213500 |
| Function |
CAPIP1, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
11 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.037 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.01 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
94 |
| confidence value |
0.65 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPYL|RCAR5 |
| Function assigned as per literature |
OsPYL/RCAR5 is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth |
| Subcellular localization as per literature |
Cytosol and nucleus |
| Cells used for localization experiment |
Tobacco epidermis cells and rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
22071266 |
| Reference of localization |
https://academic.oup.com/jxb/article/63/2/1013/508766 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.096 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os05g12260.1 protein
MVGLVGGGGWRVGDDAAGGGGGGAVAAGAAAAAEAEHMRRLHSHAPGEHQCSSALVKHIKAPVHLVWSLVRSFDQPQRYKPFVSRCVVRGGDLEIGSVRE
VNVKTGLPATTSTERLELLDDDEHILSVKFVGGDHRLRNYSSIVTVHPESIDGRPGTLVIESFVVDVPDGNTKDETCYFVEAVIKCNLTSLAEVSERLAV
QSPTSPLEQ |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
receptor activity |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| Presence of Splice variants |
No |
