LOC_Os05g10670

Expression Profile

RGAP LOCUS ID

LOC_Os05g10670

RAP-DB ID

Os05g0195101

Function

zinc finger CCCH type family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

chlo

score

2) CELLO Prediction

localization

Nuclear

score

4.101

3) NUCPRED Prediction

localization

Non Nuclear

score

0.79

4) Y-Loc Prediction

localization

Nuclear

score

77.21

confidence value

0.12

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

C3H

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsTZF1

Function assigned as per literature

OsTZF1 functions in phytochrome-mediated light and ABA responses in rice

Subcellular localization as per literature

Cytoplasm

Cells used for localization experiment

Rice protoplasts

NUCLEAR or Not Nuclear

NOT NUCLEAR

PMID

22572927

Reference of localization

https://link.springer.com/article/10.1007%2Fs00299-012-1252-x

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.125

NLS score

0.1

Protein Sequence

>LOC_Os05g10670.1 protein
MVRKRRDTARVNPTAVSGGGLSGLYSRASSSPPLHHSGSRRRLRTNTLPRRSWRRGEELESKMMMMGEGAHAPPWQQHVASPVSGVEGGGGRESEVVAAP
YHLLDTLRHYLPSNEAAAAEDEEEAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGDACE
FAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTL
VSPPRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTASGA
TVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVGWVSDLIN

GO Analysis

GO Category	Biological Process
GO Term	response to stress

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

GO Category	Cellular comBiological Processonent
GO Term	plasma membrane

GO Category	Molecular Function
GO Term	nucleic acid binding

Presence of Splice variants