| RGAP LOCUS ID |
LOC_Os05g07900 |
| RAP-DB ID |
Os05g0171300 |
| Function |
mitochondrial carrier protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.239 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.15 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.23 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsBT1-2 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
28134341 |
| Reference of localization |
https://www.nature.com/articles/srep41355#ref18 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.111 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os05g07900.1 protein
MSKRSCGGGGARLQCAAADWGGCFLALPPAAAAAVPSGGDTDGGFNLAWTLHQSFHPASGLFASVGVGFPATSSSSPSPPDAPGDPYAKYVSPEIEHHAL
PGQSVEVELMEKGKKNKKKTNKAFKLKIKVGNPHLKRLISGGIAGAVSRTAVAPLETIRTHLMVGSNGNSTAEVFQSIMKHEGWTGLFRGNFVNVIRVAP
SKAIELFAFDTANKFLTPKSGEQKKVPLPPSLVAGAFAGVSSTLCTYPLELIKTRLTIQRGVYDNFLHALVKIVREEGPTELYRGLTPSLIGVVPYAATN
YFAYDTLKKAYKKMFKTNEIGNVPTLLIGSAAGAISSTATFPLEVARKHMQVGAVGGRKVYKNMLHALLSILEDEGVGGLYRGLGPSCMKLVPAAGISFM
CYEACKKVLTEEEDD |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| Presence of Splice variants |
YES |
