LOC_Os05g07790

Expression Profile

RGAP LOCUS ID LOC_Os05g07790
RAP-DB ID Os05g0170000
Function DNA binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 3

2) CELLO Prediction
localization Cytoplasmic
score 1.057

3) NUCPRED Prediction
localization Non Nuclear
score 0.22

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.51
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) BC10|FC116
Function assigned as per literature BC10 is required for cell wall biosynthesis in rice
Subcellular localization as per literature Golgi body
Cells used for localization experiment tobacco Bright Yellow 2 (BY2) protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 18939965
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2008.03703.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.13
NLS score -0.22
Protein Sequence >LOC_Os05g07790.1 protein
MKPPRRWMYGRGGGKGKPAGLLLLGVFLCLSVVLLLLLHGSSPSLEGEGRKPEAVEAAGGGGEEEEVAVARAEVEEAPLPPGNARLAFLFIARNRLPLDL
VWDAFFRGDKEGRFSIFVHSRPGFVLTRATTRSGFFYNRQVNNSVQVDWGEASMIEAERVLLAHALKDPLNERFVFVSDSCVPLYNFNYTYDYIMSSSTS
FVDSFADTKAGRYNPRMDPIIPVENWRKGSQWAVLTRKHAEVVVEDEEVLPEFQKHCRRRPLPEFWRDWDRPIPAEAWKAHNCIPDEHYVQTLLAQHGLE
EELTRRSVTHSAWDLSSSKDRERRGWHPVTYKISDATPALVKSIKDIDNIYYETENRKEWCTSNGKPAPCFLFARKFTRAAGLKLLDLSLIAANGASTM

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No