| RGAP LOCUS ID |
LOC_Os05g06720 |
| RAP-DB ID |
Os05g0159300 |
| Function |
GDSL-like lipase/acylhydrolase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.372 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.02 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
78 |
| confidence value |
0.55 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
DARX1 |
| Function assigned as per literature |
DARX1 modulates the arabinoxylan acetylation profile and secondary wall formation |
| Subcellular localization as per literature |
Golgi apparatus |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
30886126 |
| Reference of localization |
http://www.plantcell.org/content/31/5/1113.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.147 |
| NLS score |
0.21 |
| Protein Sequence |
>LOC_Os05g06720.2 protein
MDIGHNDLMGVLHLSYDEILRKLPPIVAEIRKAIETLHKNGAKKFWIHGTGALGCLPQKLATRGEIDRDLDEHGCITRINNVAKRFNKLLSETCDDLRLQ
FASSTIVFVDMFAIKYDLVANHTKHGIEKPLMTCCGHGGPPYNYDPKKSCTANDKDLCKLGEKFISWDGVHFTDAANEIVASKVISGEFSIPRIKLTASV
VRPKKAKNSRL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
carbohydrate metabolic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
generation of precursor metabolites and energy |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
