| RGAP LOCUS ID |
LOC_Os05g06480 |
| RAP-DB ID |
Os05g0156900 |
| Function |
inorganic H+ pyrophosphatase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
7 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
3.861 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.85 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Chalk5 |
| Function assigned as per literature |
Elevated expression of Chalk5 increases the chalkiness of the endosperm, putatively by disturbing the pH homeostasis of the endomembrane trafficking system in developing seeds, which affects the biogenesis of protein bodies and is coupled with a great increase in small vesicle-like structures, thus forming air spaces among endosperm storage substances and resulting in chalky grain. |
| Subcellular localization as per literature |
Vacuole |
| Cells used for localization experiment |
Rice protoplast |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24633159 |
| Reference of localization |
https://www.nature.com/articles/ng.2923 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.066 |
| NLS score |
-0.04 |
| Protein Sequence |
>LOC_Os05g06480.1 protein
MALIGTVAAEVLIPLAAVIGILFAVLQWYMVSRVAVPPHDGVGGAGKVERESDGGDGDGDGVDDEEDGVDYRGVEARCAEIQHAISVGATSFLMTEYKYL
GAFMAAFAAVIFVSLGSVGRFSTSTEPCPYDAARRCRPALANAAFTAAAFLLGATTSVVSGYLGMRVATFANARTALEARRGIGRAFAVAFRSGAAMGFL
LASSALLVLFAAVNAFGLYYGDDWGGLYEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLF
GSYAESSCAALFVASISSFGADHDFAAMMYPLLVSAAGIVACAATTLVATDAGELGAADEVAPALKRQILISTVLMTAAVAAVTFLSLPRSFTLFDFGER
KLVKNWHLFICVSAGLWAGLVIGYVTEYFTSNAYGPVQTVAQSCRTGAATNVIFGLAVGYKSVIVPIFAIAGAIYASFRLAAMYGIALAALGMLSTIATG
LTIDAYGPISDNAGGIAEMAGMPRRVRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAYVSRAGIRTVNVVSPRVFVGLLAGAMLPYWFSAMTMRS
VGSAALRMVEEVRRQFDEIPGLAEGLAAPDYATCVRISTDASLREMVAPGALVMASPLVAGTLFGVEALAGLLAGALVSGVQVAISASNSGGAWDNAKKY
IEAGATEEARSLGPKGSEAHKAAVIGDTIGDPLKDTSGPSLNILVKLMAVEALVFAPFFAAHGGIVFNHL |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endosome |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 9 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| 11 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 13 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 14 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| Presence of Splice variants |
No |
