LOC_Os05g06350

Expression Profile

RGAP LOCUS ID LOC_Os05g06350
RAP-DB ID Os05g0155500
Function importin subunit alpha, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Cytoplasmic
score 2.376

3) NUCPRED Prediction
localization Non Nuclear
score 0.64

4) Y-Loc Prediction
localization Nuclear
score 99.47
confidence value 0.59
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) alpha1b
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.099
NLS score 1.14
Protein Sequence >LOC_Os05g06350.1 protein
MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATT
QFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRD
LVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM
HPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAIS
NATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWL
EEEDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Cellular comBiological Processonent
GO Term nucleolus
5
GO Category Cellular comBiological Processonent
GO Term cell wall
6
GO Category Molecular Function
GO Term transporter activity
7
GO Category Cellular comBiological Processonent
GO Term nuclear envelope
8
GO Category Cellular comBiological Processonent
GO Term cytosol
9
GO Category Molecular Function
GO Term binding
Presence of Splice variants No