LOC_Os05g06280

Expression Profile

RGAP LOCUS ID LOC_Os05g06280
RAP-DB ID Os05g0154700
Function ATKINESIN-13A/KINESIN-13A, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 8

2) CELLO Prediction
localization Nuclear
score 3.511

3) NUCPRED Prediction
localization Nuclear
score 0.96

4) Y-Loc Prediction
localization Nuclear
score 96.09
confidence value 0.26
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SRS3|OsKINESIN-13A
Function assigned as per literature OsKinesin-13A utilizes its microtubule depolymerization activity to promote microtubule turnover, which may not only influence transverse orientation of cortical microtubules but also facilitate vesicle transport from the Golgi apparatus to the cell surface, and thus affects cellulose microfibril orientation and cell elongation
Subcellular localization as per literature Golgi-derived vesicles
Cells used for localization experiment Root tip cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25807460
Reference of localization https://www.nature.com/articles/srep09457
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.131
NLS score 1.98
Protein Sequence >LOC_Os05g06280.1 protein
MARWLQSAGLQHLAASSTSSSSASTAGGGVDPRGGGGVGVGALGGGAGGGSLLPSLLMQGYGPQSIEEKQRLYMLLRSLNFNGETAPPSISEPYTPTAQS
FGGGNSLEGFYSPELRGELGAGLLDLHAMDDTELLSEDVASEPFEPSPFIPKEMDEDDDDMLPGSQPGPSDNYNAVANEKESTARENNVAKIKVVVRKRP
LNRKEVSRKEEDIITVHDSSSLTVYEPKLKVDLTAYVEKHEFCFDAVLDEQVSNDEVYRETVEPIIPIIFQRTKATCFAYGQTGSGKTYTMQPLPLRAAQ
DMVRLLHQPVYRNQNFKLWLSYFEIYGGKLFDLLSDRRQLLMREDGKKQVCIVGLQEFEVSDVQIVKEYIERGNAARSTGSTGANEESSRSHAILQLAIK
KHIIVTDTRRQRDRDANESKNTKAVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGSCEHTL
NTLRYADRVKSLSKGSNTRKEQPTGPTIPSSKDSSSAPSYPMPIETEEIANQIQEKRPVETSRKAAENFTSNSSMEPDRNPVSMIPSYSNRGKEENGSSG
LNDRERVDLNSSRISYNSKPQSVQSSANLQEEEKVTKVSPPRRKAYRDDKPERQSNYAKKDSGPETSRPGYKVQQAKQLQQQQRPTSASASQNSSRQSEK
ESSCDDVEIDAILEEEEALIAAHRKEIENTMEIVREEMNLLAEVDQPGSLIDNYVTQLSFLLSRKAAGLVSLQARLARFQHRLKEQEILSHAWLGLFCQF
FHCMMRRVTTVFADMDGPNTKGEVERGEREREGRESSRARAARREEMSGEVAAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKIL
DVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPGVYG
APPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Cellular comBiological Processonent
GO Term cytoskeleton
5
GO Category Molecular Function
GO Term motor activity
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term cellular component organization
8
GO Category Biological Process
GO Term cell differentiation
9
GO Category Biological Process
GO Term multicellular organismal development
10
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES