LOC_Os05g06270

Expression Profile

RGAP LOCUS ID LOC_Os05g06270
RAP-DB ID Os05g0154600
Function zinc finger, C3HC4 type domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 2.951

3) NUCPRED Prediction
localization Non Nuclear
score 0.37

4) Y-Loc Prediction
localization Nuclear
score 80.52
confidence value 0.95
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) APIP6
Function assigned as per literature APIP6 Is a RING Finger E3 Ubiquitin Ligase and functions positively in PAMP-triggered immunity in rice
Subcellular localization as per literature Entire cells with more accumulation in the nucleus
Cells used for localization experiment Nicotiana benthamiana
NUCLEAR or Not Nuclear NUCLEAR
PMID 23204406
Reference of localization http://www.plantcell.org/content/24/11/4748.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.075
NLS score -0.47
Protein Sequence >LOC_Os05g06270.1 protein
MGAREEVREEEGEEGEGVGGKEEEKAAAAAAAVSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYANGSRPTQDV
NMDEWAHDEDLYDVSYSEMPFRFHWCPFGRLAQLPSFFEEGESSPPVTFHDFMGQHMFTEHVAAVSSAPGAAHPCPYVAYLHPLPSLASSSSSHVPERTM
DGPAYHDPWHPLAGPSDGRPLQSVQPADFHHNHWAHVPNSYPQPNNNNGVAEQQGVPFGTTRAARVDGDTQRRGSSISPSYFSNGSGSRSRAPNVPPMVP
QFMRAHGSISEQYQQSSSSSLFAGAHRSGGMRTAPPPPLPENPAFCLFPPGSSGHNSMETDDAGGNRFYAWERDRFAPYPLMPVDCETNWWSSQQSHGTS
EPAPAPRRLFGQWIGVGRSSPENRSPEGSSYRQMHTPRM

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES