LOC_Os05g05280

Expression Profile

RGAP LOCUS ID LOC_Os05g05280
RAP-DB ID Os05g0145000
Function zinc finger family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 4.304

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.36
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) PTB1
Function assigned as per literature PTB1 is an important maternal sporophytic factor of pollen tube growth and a key modulator of the rice panicle seed setting rate
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24240868
Reference of localization https://www.nature.com/articles/ncomms3793.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.088
NLS score -0.47
Protein Sequence >LOC_Os05g05280.1 protein
MAMRGVDFKWYDGFFLSMLATSLIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFVDNGLAAGMGLDLGWQQRYARFCGRIVVLSVLVLLLYPFLW
VWTVIGTLWFSTARGCLPEEGQKWGFLIWLLFSYCGLACIACVAVGKWLSRRHALQQRAQQGIPVSEYGVLVDMIRVPDWAFEAVGLEMRGMGQDTAYHP
GLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRPSSEPDRPS
ASEVTAATMARYVRSSQPAGQSYLLRLQGLLLRQVVVRHGGGDDMASAENGASHVAAAVTAPATTGGVESELPSIVVDGGHQLPDR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Molecular Function
GO Term binding
4
GO Category Biological Process
GO Term signal transduction
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No