LOC_Os05g04820

Expression Profile

RGAP LOCUS ID LOC_Os05g04820
RAP-DB ID Os05g0140100
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.538

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.92
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMYB2P-1
Function assigned as per literature OsMYB2P-1 is involved in the regulation of phosphate-starvation responses and root architecture in rice
Subcellular localization as per literature Mainly in the nucleus but also very low expression in the cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22395576
Reference of localization http://www.plantphysiol.org/content/159/1/169.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.091
NLS score -0.47
Protein Sequence >LOC_Os05g04820.1 protein
MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAQLPGRT
DNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADRRGAAPTVSTERTSGSSDVNPSSAGALGNLSHLLSETAQSSMLLPVYDKNHPETASLPRPKVPPKEL
FLDQLTAGHESPSSCRSSGPTLYFPFQQPLGYSNECGTGDGASMNSLWFNQNDFNCSTISTVMPPVSPSALSTSMGLNLPPENPRHGGTGIGNTPFYWDG
SNPSSSGSTGSSGSNSMGFEPQSTTSILENSVFPWTDIGQEKDTRVHLVEELKWPDLLHGTFAEATTAMQNQSQSLYDDVIKAESQFNMEGICASWFQNQ
QPQQQLQAASDMYDKDLQRLPLSFEHI

GO Analysis
1
GO Category Biological Process
GO Term reproduction
2
GO Category Biological Process
GO Term post-embryonic development
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term cellular process
8
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No