| RGAP LOCUS ID |
LOC_Os05g04510 |
| RAP-DB ID |
Os05g0135700 |
| Function |
S-adenosylmethionine synthetase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
4.651 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
74 |
| confidence value |
0.51 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsSAMS1 |
| Function assigned as per literature |
OsSAMS1 regulate leaf senescence and seed size as well as grain number in rice (Oryza sativa) |
| Subcellular localization as per literature |
ER |
| Cells used for localization experiment |
rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24144792 |
| Reference of localization |
http://www.plantphysiol.org/content/163/4/1673.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.114 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os05g04510.1 protein
MAALDTFLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIE
QQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQH
DETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASG
LARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| Presence of Splice variants |
YES |
