LOC_Os05g04220

Expression Profile

RGAP LOCUS ID LOC_Os05g04220
RAP-DB ID Os05g0133100
Function nitrogen regulatory protein P-II, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Mitochondrial
score 1.336

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.85
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGlnB
Function assigned as per literature OsGlnB gene product interacted with N-acetylglutamate kinase 1 (OsNAGK1) and PII-like protein (OsGlnB) itself in rice
Subcellular localization as per literature chloroplasts
Cells used for localization experiment rice leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 15653795
Reference of localization https://academic.oup.com/pcp/article/45/12/1768/1827060
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.137
NLS score -0.47
Protein Sequence >LOC_Os05g04220.1 protein
MSSPATAAAAAASCGVLRHHHPPASPRPPPTTTTTTSRLLLASRSRGLQRPLRVNHAPPRRLPPTAARAQSAAAAGYQPESEFYKVEAILRPWRVPYVSS
GLLQMGIRGVTVSDVRGFGAQGGSTERHEGSEFAEDTFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVSDVIRIRTGERGERAERMAGG
LADKLSSAMPIS

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term binding
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term nucleotide binding
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Biological Process
GO Term secondary metabolic process
8
GO Category Biological Process
GO Term biological_process
9
GO Category Biological Process
GO Term lipid metabolic process
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Cellular comBiological Processonent
GO Term cytosol
12
GO Category Molecular Function
GO Term enzyme regulator activity
13
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES