LOC_Os05g03884

Expression Profile

RGAP LOCUS ID LOC_Os05g03884
RAP-DB ID Os05g0129700
Function homeobox protein knotted-1-like 6, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.248

3) NUCPRED Prediction
localization Non Nuclear
score 0.66

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/TALE

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OSH71|Oskn2
Function assigned as per literature OSH71 play role in shoot meristem development in rice
Subcellular localization as per literature Nucleus and in cell wall aligned cytoplasm or cytoplasmic strands
Cells used for localization experiment Onion epidermal peels, Rice suspension cells, Rice epidermal leaf cells and root hairs of stably transformed Arabidopsis seedlings
NUCLEAR or Not Nuclear NUCLEAR
PMID 15604716
Reference of localization https://link.springer.com/article/10.1007/s11103-004-1967-3
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score 0.34
Protein Sequence >LOC_Os05g03884.1 protein
MEDLYSIHPGISRGGGGGGGGAASEASGVAGGGSSPPHPPPPATTAAAADLTELMKAQIAGHPSYPSLLSAYIECRKVGAPPEVTTLLEEIGREGRGGGG
GATAGGEIGLDPELDEFMETYCRVLERYKEELTRPFDEAASFLTGIHTQLASLCGGAPPPTDNSDEMVGSSEDEPCSGDADAADFGQEHSSRLADHELKE
MLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGVTGGSSSGT
TLYFDTGTIGP

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No