LOC_Os05g03860

Expression Profile

RGAP LOCUS ID LOC_Os05g03860
RAP-DB ID Os05g0129300
Function CPuORF3 - conserved peptide uORF-containing transcript, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.33

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 99.96
confidence value 0.71
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LIP19|OsbZIP38
Function assigned as per literature Role in low-temperature signal switching 
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells.
NUCLEAR or Not Nuclear NUCLEAR
PMID 16051676
Reference of localization https://academic.oup.com/pcp/article/46/10/1623/1904223
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 4
Basic residues % 0.142
NLS score 2.13
Protein Sequence >LOC_Os05g03860.1 protein
MSSPSRRSSSPESNTSGGGGGADERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGENAVLRARHGELAGRLQAL
GSVLEILQVAGAPVDIPEIPDDPLLRPWQPPFAAQPIVATAMADAFQF

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No