LOC_Os05g03430

Expression Profile

RGAP LOCUS ID LOC_Os05g03430
RAP-DB ID Os05g0125000
Function ATSIZ1/SIZ1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 4.122

3) NUCPRED Prediction
localization Non Nuclear
score 0.69

4) Y-Loc Prediction
localization Nuclear
score 99.91
confidence value 0.88
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category PHD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSIZ1
Function assigned as per literature rice SIZ1 and SIZ2 are able to functionally complement Arabidopsis SIZ1 in the SUMO conjugation pathway
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 20561251
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-3040.2010.02195.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os05g03430.1 protein
MADLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYSRKMQIQCAPDLATRSHSGSDFSF
RPIEEAYDSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGNPLLPVKFVSSGVTNDGTSV
PQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQWPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCF
GVRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTVNLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSR
KWQCPICLKNYSLESLMIDPYFNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASRELSQWHMPDGTLCNPKEDVKPAMQNGNEQMMEGTSDGQKSLKIG
IKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMHMSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDRPQQQHNA
TDVIVLSDSDEENDAMVCPPAVYDNTTTANGSGFPFTTNGIGYTERYQEDAGVGTSGLGLLSNNVDDFEMNNWQMHSSYQQPEQGFQFFGNDTDVHNTFV
GSHNSFGLAPNDYSLDCNVGVEEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPSSVPLQEELSERANAPNGVQSDDWISLTLAAGGGG
NEEPAPADVNSQPQIPSTETGIEPLTDAASAFLSTNIERRSGADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE

GO Analysis
1
GO Category Biological Process
GO Term protein modification process
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Biological Process
GO Term growth
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Biological Process
GO Term cellular process
8
GO Category Biological Process
GO Term cell growth
9
GO Category Biological Process
GO Term flower development
10
GO Category Molecular Function
GO Term protein binding
11
GO Category Biological Process
GO Term biological_process
12
GO Category Molecular Function
GO Term catalytic activity
13
GO Category Cellular comBiological Processonent
GO Term nucleus
14
GO Category Biological Process
GO Term response to extracellular stimulus
15
GO Category Biological Process
GO Term cell communication
16
GO Category Biological Process
GO Term response to biotic stimulus
17
GO Category Biological Process
GO Term signal transduction
18
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants YES