LOC_Os05g03040

Expression Profile

RGAP LOCUS ID LOC_Os05g03040
RAP-DB ID Os05g0121600
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.511

3) NUCPRED Prediction
localization Nuclear
score 0.81

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category AP2-EREBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RSR1
Function assigned as per literature NS9
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.107
NLS score -0.22
Protein Sequence >LOC_Os05g03040.1 protein
MELDLNNVAEGVVEKHETAARSDSGTSESSVLNGEASGAAIAPAEEGSSSTPPSPPPPPAAVLEFSILRSSASASGENDADDDEEEEATPSPPPHHQHQQ
LLVTRELFPSAAPSPQHWAELGFLRPDPPRPHPDIRILAHAPPPAPPPPPPQPQPQAAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGF
DTAHAAARAYDRAAIKFRGVEADINFNLSDYEEDMRQMKSLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAA
RAYDKAAIKCNGREAVTNFEPSTYDGELPTDAAAQGADVDLNLRISQPAASQQSPKRDSGSLGLQIHHGSFEGSEFKRAKNDAAPSELASRPHRFPLLTE
HPPIWTAQPHPLFPNNEDASRSSDQKRKPSEGVAVPSWAWKQVSHHHPAPPHTLPLPFFSSSSSSPSSSSAAASSGFSKAATTAAAAQHTATLRFDPTAP
SSSSSSRHHHHH

GO Analysis
1
GO Category Biological Process
GO Term anatomical structure morphogenesis
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Molecular Function
GO Term DNA binding
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Biological Process
GO Term reproduction
9
GO Category Biological Process
GO Term post-embryonic development
Presence of Splice variants YES