LOC_Os05g01990

Expression Profile

RGAP LOCUS ID LOC_Os05g01990
RAP-DB ID Os05g0110500
Function DEAD-box ATP-dependent RNA helicase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 10

2) CELLO Prediction
localization Nuclear
score 2.673

3) NUCPRED Prediction
localization Nuclear
score 0.94

4) Y-Loc Prediction
localization Nuclear
score 99.67
confidence value 0.8
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRH17
Function assigned as per literature OsRH17 may play a role in ribosomal biogenesis and suppress 16S rRNA maturation in E. coli
Subcellular localization as per literature nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25447922
Reference of localization https://www.sciencedirect.com/science/article/pii/S0378111914012864?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 1
Number of Bipartite 3
Basic residues % 0.152
NLS score 2.89
Protein Sequence >LOC_Os05g01990.1 protein
MAKKLGKSPVAKEEDKEGLFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTF
ALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGFGKALEDILE
HLGSRNDTSNQNKNKMEPMKRQNLLLSATLNEKVNRLAKISLKNPVMIGLDEQNSSAHGKNHTSLLSDDEEEILEKHNVTVEQAVDDFKLPAQLVQRYVK
VSCGSRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVA
ARGLDFPKVKCIIQYDSPGEASEYVHRVGRTARIGEKGEALLFLQPIETDYLRDLELHGASLTEYPLQKVLDSFPVNGQRLHKRKQISLDMHPWIMSLQR
ALESFVTSEDTTKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLLGRSHQVQLKKRKKEQKRERPAKRRKIPAKR

GO Analysis
Presence of Splice variants YES