| RGAP LOCUS ID |
LOC_Os05g01450 |
| RAP-DB ID |
Os05g0104800 |
| Function |
eukaryotic translation initiation factor 3 subunit F, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
7 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.085 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.02 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
52 |
| confidence value |
0.07 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OseIF3f |
| Function assigned as per literature |
OseIF3f plays a role in microgametogenesis |
| Subcellular localization as per literature |
Endoplasmic reticulum and cytosol |
| Cells used for localization experiment |
Onion epidermal cells and rice root cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
27200010 |
| Reference of localization |
https://www.frontiersin.org/articles/10.3389/fpls.2016.01399/full |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.088 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os05g01450.1 protein
MAAAEGPVLLFPSTSSTSARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIVGW
FSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQEIPLDLRMLEAGKVGFDILKSTIVEKLPNDLEGMESSME
KLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISDAVASMPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKLNTAAQIL |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
pollination |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
translation |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
translation factor activity, nucleic acid binding |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
embryo development |
|
| Presence of Splice variants |
YES |
