| RGAP LOCUS ID |
LOC_Os05g01140 |
| RAP-DB ID |
Os05g0102000 |
| Function |
methyltransferase, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.781 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.28 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
83 |
| confidence value |
0.49 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsJMT1 |
| Function assigned as per literature |
OsJMT1, by altering levels of JA and related metabolites, plays a role in regulating plant development and herbivore-induced defense responses in rice |
| Subcellular localization as per literature |
cytosol |
| Cells used for localization experiment |
N. tabacum leaves |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
26466818 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.12436 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.099 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os05g01140.1 protein
MMQSAAGAMELLVASQEAGGVVVVGMNSGDAGELSYANNSDMQRTIAAATRKERQEMAAAVRRGRRQARAIAIADLGCATGPNALLMAGDAVEAMLGDAE
RQQEAAPAEFHVFLNDLPSNDFNSVFRQKQKLVVPSNNANSSRCLVSAWPGSFYGRVFPADSLDYVVSSSSLHFLSRAPADAAPNEGRMYVSASSSSSSS
SRVLHAYRAQFQADFRLFLSCRAEEVRRGGVLLLTFVARREAVPSPHDCHLWDLLAEAAADDRRLVDSFDAPFYGPCPEELREAIREEGSFQVTRMELFE
VSRSRSCQSQADLDQLAAQTSSTIRAVVEPMLGPHFGWDAMDALFRRYTHLLHNYYRHNNDQLTNVFLALHKI |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
transferase activity |
|
| Presence of Splice variants |
No |
