LOC_Os04g59570

Expression Profile

RGAP LOCUS ID LOC_Os04g59570
RAP-DB ID Os04g0692200
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9.5

2) CELLO Prediction
localization Nuclear
score 1.764

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.25
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) YSS1
Function assigned as per literature YSS1 encodes a chloroplast nucleoid-associated protein required for chloroplast development in rice seedlings
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27578095
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-016-2590-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 7
Number of Bipartite 2
Basic residues % 0.11
NLS score 3.54
Protein Sequence >LOC_Os04g59570.2 protein
MAAMAMVSVQLTVAARPLRSRRALSVFTCAAPPRQRPPPGPTKHRRLRHDADAQPPRKRGHPPPPPPRRTRTRGPPARPQQSYTDDDEEEDDQDEEEGSF
GGGTRAAAMPKPPAGFVLDDQGRCIAAASKRIVTIIDDTNNRPLECIIRRVFRSTLDHDCMLLCPVDMPVQVLKSANFSGWIAVDDDQIKEIIPSVAYAL
ARVHMHFVESGFCYTARGGFCFPEDAIQEFHDSGDGGDSVPFEGVEICCFNLDGAHYMIYTPVDPLLFVAVKDKDGVLRIAEDELMDDPAVVGAIDEETE
FTALVEEEEALLESVLGER

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES