LOC_Os04g58780
| RGAP LOCUS ID | LOC_Os04g58780 | ||||
| RAP-DB ID | Os04g0684500 | ||||
| Function | pentatricopeptide repeat protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | chlo | ||||
| score | 12 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 1.282 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.5 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 9 | ||||
| confidence value | 0.47 | ||||
| Number Of Software Predicting Nucleus | 1 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | WSL5|OsPPR4 | ||||
| Function assigned as per literature | WSL5allele is required for normal chloroplast development in maintaining retrograde signaling from plastids to the nucleus under cold stress. | ||||
| Subcellular localization as per literature | Chloroplasts | ||||
| Cells used for localization experiment | Rice protoplasts cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 29893948 | ||||
| Reference of localization | https://academic.oup.com/jxb/article/69/16/3949/5034909 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 1 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 1 | ||||
| Basic residues % | 0.129 | ||||
| NLS score | 0.21 | ||||
| Protein Sequence | >LOC_Os04g58780.1 protein MQFLSLSAAAASSPAAAVLPPKPFKPLSSAAPFRRPSPPPPPPSPVPSPAPPPPPHRPSPSPPPNPLSSKLWLSSKLSPPPPETLEQPEPSTTTTTTTPP PPEPEAEAEARRQEEFRHKGKVFVGNLPLWARKAEIAEFFRQFGPLEKVELVRGHDDPERNVGFCFLYYGGDDADAAAERAVEVDGVDFRGRSLTVRLDD GRKGRARAEQRARWVNDGRRREPRSPWHEGRDEACREFRRVVESRPDNWQAVVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAF VFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEEDGI DAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS VLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDV WEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSLL SRATVMEGSTYTGIISVCREMSENDLTVDLRTAVHWSRWLHKIERTGGALTEALQRIFPPDWNSLEFLGEPSSSISMGESDDYSDSDFSGDEDEDHNIDD S |
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GO Analysis |
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| 1 |
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| 2 |
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| 3 |
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| Presence of Splice variants | YES | ||||