| RGAP LOCUS ID |
LOC_Os04g58550 |
| RAP-DB ID |
Os04g0681900 |
| Function |
acyl-CoA-binding domain-containing protein 6, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
E.R. |
| score |
4.5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.308 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.26 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
59.27 |
| confidence value |
0.16 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsACBP4 |
| Function assigned as per literature |
ACBP4 may be involved in lipid degradation and lipid biosynthesis |
| Subcellular localization as per literature |
Endoplasmic reticulum |
| Cells used for localization experiment |
Root tip and cotyledon cells of transgenic Arabidopsis thaliana |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24738983 |
| Reference of localization |
https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.12809 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.071 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g58550.1 protein
MGGDWQELAQAAVIGLLFAFLVAKLISTVIAFKEDNLRITRSTPTSPSAADTPAAPAPPPASLDGGHGDTSDGSGSDSDSDWEGVESTELDEEFSAASAF
VAASAASGTSVPEQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDELFPNWSMGSSTKRKDEDTTVSASSSKGPM
GPVFSSLMYEEEDQGNDSELGDIHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILVNANADVNAQDNEGQTALHYAVLCEREDI
AELLVKHHADVQIKDEDGNTVRELCPSSWSFMNLAN |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
lipid binding |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
lipid metabolic process |
|
| Presence of Splice variants |
No |
