LOC_Os04g58130

Expression Profile

RGAP LOCUS ID LOC_Os04g58130
RAP-DB ID Os04g0677650
Function katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Nuclear
score 2.675

3) NUCPRED Prediction
localization Non Nuclear
score 0.54

4) Y-Loc Prediction
localization Cytoplasm
score 76
confidence value 0.19
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsKTN80b|OsWD40-111
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.126
NLS score 0.04
Protein Sequence >LOC_Os04g58130.1 protein
MTTNTKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGDDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLT
GHRSNCMSVDFHPFGEFFASGSLDTNLKIWDIRRKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF
LLATGSSDKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCGLHESLKVFSWEPIRCHDTVDVGWSRLSDLNVHEGKLLGCSFNQSCVGIWVVDL
TRLEPYATGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRLSVLQNSENNIKSSTGRLSVSQNSDSALKETKSTTSSGLVPVTPQRAGNGSSTKTVGN
STFASSGTNLKRGSLKSNNSSSLQNFSKIDVVPVIIPRTSSGPELATDSRSDAADVGPVLSKSGRRIEIANDSRKESSDVAAAVVPRTNSRTEMASDSAP
VVGPRANLRMEVSADSAPIVPKSGRRLESSVESRKESTDVASAAAPKTSSRMEVAPDSAPLLSKAGRRVESATDSRKESADVAPVVPRTTSRMEMAPDSR
REISAGRMSPFRVQSRYSELRKLNNAKADADKVDAGSKNSETDDFTCQIYLPRRNGVVQSGISEETREDAKPGVIDRMGFPSSAEPNTHRSENYVSRMRK
PRDNCYIEVSRAGRTRPTASNWESRDQSPGNEEPTTSNSSSMAPTGRLYSSRGSSQAAETPTIASDEDVLSVLMEQHELFLSSTRSRLTKLQIVHQMWQR
NDIRGIIAAMEKMSDHAVSADVASVLMEKSETITLDLCTVILPVLTDLLESKTDRHLGVSLELLVKLVRTFGSVIHSTVSAGPSSVGVDLQAEQRRERCN
LCFIELEKVKNKLPFLSRRKGAVANTAQELSLVFQEVM

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
4
GO Category Biological Process
GO Term response to stress
5
GO Category Biological Process
GO Term response to abiotic stimulus
6
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants No