LOC_Os04g57810

Expression Profile

RGAP LOCUS ID LOC_Os04g57810
RAP-DB ID Os04g0674400
Function GA18008-PA, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Extracellular
score 1.459

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Cytoplasm
score 92
confidence value 0.58
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDRE2
Function assigned as per literature OsDRE2 plays a positive role in the regulation of rice immunity
Subcellular localization as per literature Cytoplasm but interacts with OsRLCK185 at plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30418086
Reference of localization https://www.tandfonline.com/doi/abs/10.1080/09168451.2018.1543012?journalCode=tbbb20
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os04g57810.1 protein
MAATVAEALAVTDELALPLRAVGDLAAAAGVSREEVVVITQCASLGGKLPFDDASVGSVLAVIKKVENLGDLFITEISRVLKAGGMVLIQSSPSDQDPNN
SIQRKLLLGGFVDVQASAASSQDSEHSVTIKAKKVSWSLGSSFPLKKATKGLPKIQIDDDSELIDEDSLLTEDDLKKPELPVVGDCEVGATRKACKNCTC
GRAEAEEKVEKLNLTSEQINNPQSACGNCGLGDAFRCGTCPYRGLPAFKPGEKIALPGNFLAADM

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES