| RGAP LOCUS ID |
LOC_Os04g57720 |
| RAP-DB ID |
Os04g0673300 |
| Function |
OsRR6 type-A response regulator, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Chloroplast |
| score |
2.248 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.08 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
41 |
| confidence value |
0.08 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
Orphans |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsRR6 |
| Function assigned as per literature |
OsRR6 is responsible for altering rice morphology and cytokinin metabolism |
| Subcellular localization as per literature |
cytoplasmic space |
| Cells used for localization experiment |
epidermal cells of rice leaf sheaths |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
17293362 |
| Reference of localization |
https://academic.oup.com/pcp/article/48/3/523/2329782 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.124 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os04g57720.1 protein
MAAAAQAPAAAKVVVATSPRAGGGGGGGGDRKVVPVVVAAAAGDEAQSEMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMI
ITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRIR |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 8 |
| GO Category |
Molecular Function |
| GO Term |
signal transducer activity |
|
| Presence of Splice variants |
No |
