LOC_Os04g57610

Expression Profile

RGAP LOCUS ID LOC_Os04g57610
RAP-DB ID Os04g0671900
Function auxin response factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10.5

2) CELLO Prediction
localization Nuclear
score 3.265

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 93.12
confidence value 0.33
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARF12
Function assigned as per literature OsARF12 is a transcription activator on auxin response gene that regulates root elongation and affects iron accumulation in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 21973088
Reference of localization https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/j.1469-8137.2011.03910.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.078
NLS score -0.47
Protein Sequence >LOC_Os04g57610.1 protein
MSSSSAASIGPPQPPPPPAPPEEGGWLEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADV
ETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPK
RHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKAVF
HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGVASLHDDS
NALMWLRGVAGEGGFQSLNFQSPGIGSWGQQRLHPSLLSSDHDQYQAVVAAAAASQSGGYLKQQFLHLQQPMQSPQEHCNLNPLLQQQILQQASQQQIIN
PDAQNIQTMLSPSAIQQQLQQLQQMQQVQNDQKQKIQPDQSYQVPTSAVLPSPTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDL
SRFNQPVASEQQQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQNQSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNA
MYGCLDDSSGLLQNTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYI
KILSPEDVHKMGKQGNDPRYLS

GO Analysis
1
GO Category Biological Process
GO Term flower development
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term reproduction
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES