LOC_Os04g56850

Expression Profile

RGAP LOCUS ID LOC_Os04g56850
RAP-DB ID Os04g0664400
Function auxin response factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.171

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 96.56
confidence value 0.6
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category ARF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsARF11
Function assigned as per literature DS1 protein interact with auxin response factor 11 (OsARF11), a major transcriptional regulator of plant height and leaf angle, to co-regulate D61/OsBRI1 expression
Subcellular localization as per literature Nucleus
Cells used for localization experiment tobacco epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 30084027
Reference of localization https://link.springer.com/article/10.1186/s12284-018-0239-9
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.085
NLS score -0.22
Protein Sequence >LOC_Os04g56850.1 protein
MASSQEKAKTGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITL
HADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYR
GQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIPVARYN
KATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQVEWDEHGYGERPERVSIWDIETPENTLVFPSSTLNSKRQCLPGYGVSVP
GMEIGSANMSSFPRAQGNPYGSLQHIPAVGSELAIMLLNQSGQTLGSPLSFHQSSYSSIIQNVKQNYIPPLTVSTSACLTKQESLPSDDAQHQFHMANMQ
NGDLEGSEVQPVIDSISESKLNATSRDPRNTDSYTSRSTSEQNSKGEPRGKTRRSKKGLPHKTVSEKSDLSSAPSWICDNQQVGLESKLVGCDEQVNCGN
IEDSSGALTQGNFVGQPHGHQVEQKGVLSPPKVESSKSPDGGKSVNSFPNQGCFSQFIDGLDWMTQPSYYQDSNVIQPAGVSENIFSSSADIPPSMIADT
METFQASCLSDCLPNSIQEFISSPDLNSLTFLSPDMQNLEVQLQHDGSNLPSTSNSFVQMSFSEESASQSANLSGLHMESTHRSINTTSCSQPMSTGGFD
AGMYSKLPRLKESQILSLPEIHTNSMGTSACSMDATEYSLDRSAKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEW
KLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term DNA binding
8
GO Category Biological Process
GO Term flower development
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Biological Process
GO Term embryo development
11
GO Category Biological Process
GO Term reproduction
12
GO Category Biological Process
GO Term post-embryonic development
13
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES