LOC_Os04g56480

Expression Profile

RGAP LOCUS ID LOC_Os04g56480
RAP-DB ID Os04g0659900
Function pelota, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 8

2) CELLO Prediction
localization Cytoplasmic
score 2.838

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Nuclear
score 97.3
confidence value 0.55
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPELOTA|LML1|Ospelo
Function assigned as per literature OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway in rice
Subcellular localization as per literature Endoplasmicreticulum and plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29193778
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.12613
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.127
NLS score -0.47
Protein Sequence >LOC_Os04g56480.1 protein
MKLVYRNLARNGPGSVKLVPEEEDDLWHAYNLIVPGDTLQSVTVRKVLREMASGGRDAERVRLKLEIVVESVDYDKEGSVLRVRGKNITENDHVKIGQFH
TVELELKRQFTLTKELWDWLALDTIQQACDPTASADLAVILMQEGLAHLFLIGRSITVTRARIETSIPRKHGPAIAGYESALKKFFEHVLQAFLKHIDFE
VVQCAVIASPGFTKDQFRDYMHLEAARRDLRLIIENKQRIVLAHAPSGYKHSLKEVLDSPSVMTLIKDTKAAQEVQALKDFFNMLTNDSARACYGPKHVE
IANERLAIQTLLITDNLFRNSDIATRQNYVRLVESVKKFGGTVHIFSSMHVSGEQLAQLTGIAAILRFPLPDLEDIEM

GO Analysis
1
GO Category Biological Process
GO Term cell cycle
2
GO Category Biological Process
GO Term cellular component organization
3
GO Category Biological Process
GO Term translation
4
GO Category Molecular Function
GO Term translation factor activity, nucleic acid binding
Presence of Splice variants YES