LOC_Os04g56400

Expression Profile

RGAP LOCUS ID LOC_Os04g56400
RAP-DB ID Os04g0659100
Function glutamine synthetase, catalytic domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 2.152

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.61
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGS2|lambdaGS31
Function assigned as per literature over-expression of GS2 in rice plants confers salt resistance
Subcellular localization as per literature chloroplast
Cells used for localization experiment none
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 10949377
Reference of localization https://link.springer.com/article/10.1023/A:1006408712416
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.103
NLS score -0.22
Protein Sequence >LOC_Os04g56400.1 protein
MAQAVVPAMQCQVGAVRARPAAAAAAAGGRVWGVRRTGRGTSGFRVMAVSTETTGVVTRMEQLLNMDTTPFTDKIIAEYIWVGGTGIDLRSKSRTISKPV
EDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLG
WPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWN
GAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVT
ALLAETTILWEPTLEAEVLAAKKLALKV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term extracellular region
3
GO Category Cellular comBiological Processonent
GO Term plastid
4
GO Category Cellular comBiological Processonent
GO Term thylakoid
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Cellular comBiological Processonent
GO Term mitochondrion
10
GO Category Biological Process
GO Term metabolic process
11
GO Category Biological Process
GO Term cellular process
12
GO Category Biological Process
GO Term biological_process
13
GO Category Cellular comBiological Processonent
GO Term ribosome
14
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants YES