LOC_Os04g56170

Expression Profile

RGAP LOCUS ID LOC_Os04g56170
RAP-DB ID Os04g0656500
Function OsSPL8 - SBP-box gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.427

3) NUCPRED Prediction
localization Nuclear
score 0.91

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.99
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category SBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLG1
Function assigned as per literature controlling ligule and auricle development.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast cells 
NUCLEAR or Not Nuclear NUCLEAR
PMID 17594063
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-007-9196-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 3
Basic residues % 0.084
NLS score 2.15
Protein Sequence >LOC_Os04g56170.1 protein
MMNVPSAAAASSCDDFGYNATPPPPPSLLPIMDQDGGGGSIQRDHHQHHNHQQLGYNLEPSSLALLPPSNAAAAAAHHATIAHASPHDLLQFYPTSHYLA
AAGGAGGGGNPYSHFTAAAAAGSTFQSYYQQPPQDAPEYYFPTLVSSAEENMASFAATQLGLNLGYRTYFPPRGGYTYGHHPPRCQAEGCKADLSSAKRY
HRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKPSDGEHSGEKRRAQANKSAATKDKAGSSSKNAGIGDGFE
TQLLGGAHMSKDQDQAMDLGEVVKEAVDPKGKASMQQQQQQAHHGIHQQSHQQHGFPFPSSSGSCLFPQSQGAVSSTDTSNIAQVQEPSLAFHQQHHQHS
NILQLGQAMFDLDFDH

GO Analysis
1
GO Category Biological Process
GO Term flower development
2
GO Category Biological Process
GO Term multicellular organismal development
3
GO Category Biological Process
GO Term cell cycle
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Cellular comBiological Processonent
GO Term nucleus
Presence of Splice variants No