LOC_Os04g55230
| RGAP LOCUS ID | LOC_Os04g55230 | ||||
| RAP-DB ID | Os04g0645100 | ||||
| Function | tetratricopeptide repeat domain containing protein, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 9 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.894 | ||||
3) NUCPRED Prediction |
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| localization | Nuclear | ||||
| score | 0.9 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 89.08 | ||||
| confidence value | 0.32 | ||||
| Number Of Software Predicting Nucleus | 4 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | FLO2 | ||||
| Function assigned as per literature | The allelic diversity of flo2 perturbed the expression of starch synthesis-related genes including OsAGPL2, OsAGPS2b, OsGBSSI, OsBEI, OsBEIIb, OsISA1, and OsPUL | ||||
| Subcellular localization as per literature | Nucleus | ||||
| Cells used for localization experiment | onion epidermal cells | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 25711812 | ||||
| Reference of localization | https://www.sciencedirect.com/science/article/pii/S0168945214002982?via%3Dihub | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 3 | ||||
| Number of PAT7 | 1 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.13 | ||||
| NLS score | 0.66 | ||||
| Protein Sequence | >LOC_Os04g55230.1 protein MAPKGAGRGKGRGGGGGGKGDKRKKEEKVVPSAIDVTVVTPYESQVTLKGISTDRVLDVRKLLGSNVETCHLTNYSLSHVTRGQRLEDGVEIVSLKPCSL TIVEEEYATEAAAAAQVRRLLDIVACTTAFVNKPRDGAKHKSSKHARPATPPSPPALAASPDAHGAGAAQAPPISEAHDMAAIRPPPRLGEFYDFLSFAH LTPPVHFIRRKESNGASQEGDYFEIEVKVCNGKLLHIVASVKGFYSAGKPHTVSHSLVDLLQQLSSAFANAYDALMKAFLDHNKFGNLPYGFRANTWLIP PIYLDSATKCPALPVEDENWGGNGGGNGRDGKYDRRRWAKEFSTLARMPCKTEEGRVIRDRKAFLLHNLFVDTAIFRAASTIQRLIDLSGNSTSQQAGLD GSLAIEERVGDLLITVKRDQADASLKLEDKVDGVALYQTGSMDISQRNLLKGLTSDESVVVKDTSILGVVIVKHCGYTATVKVSGRTKDGNGGKQTSDIC DHLDGISNVDVDDLPDGGSNALNINSLRISLPKIVNSDIASTQCPTPQSHVDNHARKLVRKILEDSLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPA SEDKKNAGHVEKETTIKGLGKHFEQLKKIKKKECHVEGAMSEKEDSDSNCSVINGMEESENTKETDISKLMSEDDFCRLKDLGAGLHQKSLEELTMMAHK FYDDTALPKLVADFASLELSPVDGRTMTDFMHTRGLNMCSLGRVVELAEKLPHIQSICIHEMVIRSFKHIVRAVIAAVDDMQNMSAAIAETLNILLGCPR LESGTETDAHSEHNLRFRWVERFLSKRYNWKLKDEFAHLRKFIILRGLCSKVGLELVARDYDMNSPNPFDKSDIVNIIPVCKHVVYSSIDGRNLLESSKM ALDKGKLDDAVNFGTKALSKIVAVCGPYHRLTANAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPETMKSYGDLSVFYYRLQHIEMALKYVNR ALYLLQFSCGLSHPNSAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSMMDAYSLSVQHEQTTLQILQEKLGQDDLRT QDAAAWLEYFESKALEQQEAARRGIPKPDSSIASKGHLSVSDLLDYISPDQERKERDTQRKGRRAKNNIRAHQGELVEEKESFEHDIGSPHEANKEEFQQ VKSKAHPPAISEENYAIHDELKQVDPLSPEEYSDEGWQAANLRGRSANVRKKSSRRRPALTKLMVDRLEDGRTGSAYRAGVQQHMKGDKEDVINSSSQLS FGSFLKTDKVNGNSSNIENKVFNAISKPERGIKLSGINRPATIASKLVSYKDVAVSPPGTVLKPILEQKEAKEKDNAQNTDLIVSSEEEDKKLTDEDEEK EKPSHDSSKEVLSSEPEEIGNDEKAPDSNSDESPTESKKKGGSKLSASAPPFNPGSLLSMSHPYSTVAIYDASVVLQPIPSQPMEILPHAIDTRVPRGPR STLYYRTGHTFQRKQGYAHSQSTILRGSNSPPTMNPHAAEFVPGKTSQQPDVANREPSADVSVTDSADQLLAPQTSDEVKAGMPAAEQAIQGESTSPCKG KENRAKDALRNSCKTELARQILFSFIVKSVHDSLGSTGAESDRKPSGPDESGNAQSSNNINKSPSGRKELDKQQKATVVPKSEKDTEGFTVVSKRRRSKQ HFVHPIHGLYSQQSICTSVS |
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GO Analysis |
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| 1 |
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| 2 |
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| Presence of Splice variants | No | ||||