LOC_Os04g54340

Expression Profile

RGAP LOCUS ID LOC_Os04g54340
RAP-DB ID Os04g0635900
Function double-strand break repair protein MRE11, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 4.259

3) NUCPRED Prediction
localization Non Nuclear
score 0.79

4) Y-Loc Prediction
localization Nuclear
score 99.88
confidence value 0.92
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMRE11
Function assigned as per literature OsMRE11 is involved in maintaining rice chromosome stability
Subcellular localization as per literature nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID not available
Reference of localization https://link.springer.com/article/10.1007/BF03030412
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.139
NLS score 0.27
Protein Sequence >LOC_Os04g54340.1 protein
MGDESNTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRSTLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRF
GQVNYEDPNFNVGLPVFTIHGNHDDPAGVDNLSAIDILSACNLVNYFGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLGNIRDERLNRMFQTPHAVQWM
RPETQDGMSVSDWFNILVLHQNRIKTNPKSAINEHFLPRFLDFIVWGHEHECLIDPQEVPGMGFHITQPGSSVATSLIDGEAKPKHVLLLEIKGNQYRPT
KIPLRSVRPFHYAEVVLKDEVDVDPNDQASVLEHLDKIVRNLIKKSSQPTASRPETKLPLIRIKVDYSGFSTINPQRFGQKYVGKVANPQDILIFSKSAK
KRQTTGVGNIDDSEKLRPEELNQQTIEALVAENNLKMEILPVDDLDIALHDFVSKDDKMAFYACLQRNLEETRTKLNSEADKFKIEEEDIIVKVGECMQE
RVKERSLRSKEDSRFTSSSQNLDTGGRSVTAQSNLNSFSDDEDTREMLLGARTTNAGRKASGFTRPSKDATDVAKTGTSRRGRGRGTASMKQTTLNFSQS
RSSAAIRSEEVQSSSDEENETNEANEVVESSEPEESPQQTGRKRAAPRGGRGRGRGATAKRGRKADISSIQSMLMSKDDDDDDEDDRPKKPPPRVTRNYG
AVRRR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Biological Process
GO Term response to stress
5
GO Category Molecular Function
GO Term nuclease activity
6
GO Category Cellular comBiological Processonent
GO Term nucleus
7
GO Category Biological Process
GO Term metabolic process
8
GO Category Biological Process
GO Term cellular process
9
GO Category Molecular Function
GO Term binding
Presence of Splice variants No