LOC_Os04g52960

Expression Profile

RGAP LOCUS ID LOC_Os04g52960
RAP-DB ID Os04g0620700
Function nucleolin, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.798

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Nuclear
score 99.28
confidence value 0.69
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNUC1
Function assigned as per literature OsNUC1 plays an important role in plant root growth via the central and C-terminal domains and it also contributes to salt tolerance
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24157209
Reference of localization https://www.sciencedirect.com/science/article/pii/S016894521300191X?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.157
NLS score 0.39
Protein Sequence >LOC_Os04g52960.1 protein
MGKSSKKSAVEVAPTSVSVSEGKSGKKGKRNAEDEIEKAVSAKKQKTVREKVVPSKEEAKKVKKQPPPKKVESSSSEEDSSESEEEVKAQPKKTVQPKKA
AQPAKEESSDDSSDDSSSDDEPAKKPVARPNKAALSTNSSSSDDSSDESLSDDEPVKKPAAPLKKPVALATNGSKKVETDSSSSDSSSDEESDEDDKKTA
APVKKPSVAAIQKKTQESDSSDSDSDSESDEDVPTKAPAVAKKKEESSESSDSESDSDSDDEAAAVKKEEESSDSSDSDSESESDSDEPAKPTIPAKRPL
TKDTKKGQSKDESEDSSDESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQTQAKKQAPVAQESSSSDESSEED
SDMESDEPAKTPQKKETAVSVGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAE
AAKKALELAGHDLMGRPVRLDLARERGAYTPGSGRDNSSFKKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMD
FADNGSLSKAYELNGSDLGGYSLYVDEARPRPDNNREGGFSGGRDFNSSGRGGRRGGRGDGSRGRGDRGRGRGFGRGDRGHGGRGTPFKQSAGTPSAGKK
TTFGDDD

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term nucleic acid binding
4
GO Category Biological Process
GO Term cellular process
5
GO Category Cellular comBiological Processonent
GO Term nucleolus
6
GO Category Molecular Function
GO Term nucleotide binding
Presence of Splice variants No