LOC_Os04g52920

Expression Profile

RGAP LOCUS ID LOC_Os04g52920
RAP-DB ID Os04g0620200
Function remorin family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 4.572

3) NUCPRED Prediction
localization Non Nuclear
score 0.64

4) Y-Loc Prediction
localization Nuclear
score 89.68
confidence value 0.51
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GSD1
Function assigned as per literature GSD1 may play a role in regulating photoassimilate translocation through the symplastic pathway to impact grain setting
Subcellular localization as per literature Plasma membrane and plasmodesmata
Cells used for localization experiment Onion and tobacco epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25253885
Reference of localization http://www.jstor.org/stable/pdf/43191561.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.139
NLS score -0.47
Protein Sequence >LOC_Os04g52920.1 protein
MEYERIHKVQAGALSPTKLRMKLLGTHNRVRVISNSSSRTSPSKNTEPSQAQNRLLVCDVLEEAVSGSSDGSKCSSAINKTEALEKDPPLDINKVEDMTK
SSVQQPASSNSSMIHPVRTIEEESNDCDSGIDNASTSSFEFHGGEKTAAQNPTSGYFSRQTSSKWNDAEKWIVNKQNVQQNISKGAPQNQSAQQMNSAAG
RGFIVPKISNRNIIPRPMQNMKRPSPASSASRSILERLSFGSHQPKLVRHADVCTVNNAGVTSEYQTKATDNSSSIEIRPYKDPKAIPAVHSVSVRDVGT
EMTPIPSQDPSRTGTPLGSMTPTRSPNCSIPSTPVGGRSTASPGDDNTDDGPYFNRKGGTNEISDDEMRLKTRKEIAALGIQLGKMNIATWASKEELELV
SASPSIADLERMKKEYAARAAAYEEAENFKHTARFKKEELKIEAWESLQKAKIESEMKRIEEHAEKLRSEAMAKMAEKLEMTRRLAEEKRASANARMNQQ
AAKAVHKAELIRQTGRVPGSCILCCSGCFCQH

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES