LOC_Os04g52900

Expression Profile

RGAP LOCUS ID LOC_Os04g52900
RAP-DB ID Os04g0620000
Function ABC transporter family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization plas
score 10

2) CELLO Prediction

localization PlasmaMembrane
score 4.629

3) NUCPRED Prediction

localization Non Nuclear
score 0.49

4) Y-Loc Prediction

localization Cytoplasm
score 99
confidence value 0.88
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020) OsABCC1|MRP1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis

Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.1
NLS score -0.47
Protein Sequence >LOC_Os04g52900.1 protein
MGFDPLEWYCQPVNGGVWSDVENAFGAYTPCGTETLVVCISYFALFGVCFYRIWRTTRDYTVQRYKLRSPYYNYMLGLLVVLCIAESLYRIATGTSIMNL
DGETSLAPFEVTSSIIEIAAWCCMLVMIALETRIYIYEFRWYIRFVVIYILVGEAAMFNLVLSVRQYYSSSSIFYLYCSEIIFKLLFGILMVVYLPSLDS
YPGYTPVRHEALVDNTDYEPLPGGEQICPERHANIFSRIFFSWMTPLMQQGFKRPITDKDIWKLDSWDETETLYNRFQKCWNNELQKPKPWLLRALHSSL
GGRFWLGGFFKIGNDASQFVGPLILNLLLESMQKGDPSWSGYIYAFSIFAGVSLGVLSEAQYFQNVMRTGFRLRSTLIAAVFRKSLRLTNDSRKKFASGR
ITNLISTDAESLQQVCQQLHSLWSAPFRIVIAMVLLYAQLGPAALVGAAMLVLLFPIQTVIISKMQKLTKEGLQRTDRRISLMNEILAAMDTVKCYAWEQ
SFQSKVQDIRDDEISWFRSAQLLAALNSFILNSIPVIVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNCKVSLKRLEDLLLAEE
RLLLPNPPLDPELPAISIKNGYFSWESQAERPTLSNVNLDVPMGSLVAIVGSTGEGKTSLISAMLGEIPPVSGSNTSVVLRGTVAYVPQVSWIFNATVRD
NILFGSPFQPPRYEKAIDVTSLRHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSDSDVYIFDDPLSALDAHVGRQVFDKCIKEELQHKTRVLVT
NQLHFLPYVDKILVVHDGVIKEEGTFDELSNSGELFKKLMENAGKMEEQMEEKQDESKRQDDIKHPENGGSVIADGDMQKSQDTSNKTKQGKSVLIKQEE
RETGVISAKVLSRYKNALGGIWVVSVLFFCYALTEVLRISSSTWLSVWTDQGSTKIHGPGYYNLIYGLLSFGQVLVTLTNSYWLITSSLRAAKRLHDAML
RSILRAPMVFFHTNPLGRIINRFSKDLGDIDRNVAIFVNMFMAQISQLLSTFVLIGIVSTMSLWAIMPLLILFYAAYLYYQTTSREVKRLDSITRSPVYA
QFSEALNGLSTIRAYKAYDRMANINGKSMDNNIRFTLVNMSSNRWLAIRLETLGGIMIWFTATFAVMQNQRAENQKAFASTMGLLLTYTLNITNLLTAVL
RLASLAENSLNAVERVGTYIELPSEAPPVIEDSRPPPGWPSSGVVKFEDVVLRYRPELPPVLHGISFIINGSEKVGIVGRTGAGKSSMLNALFRIVELER
GRILVDDCDTSKFGIWDLRKVLGIIPQAPVLFSGSVRFNLDPFNEHNDADLWEALERAHLKDVIRRNALGLDAEVSEAGENFSVGQRQLLSLARALLRRA
KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTVIDCDRLLILSAGKVLEFDSPENLLSNEHSAFSKMVQSTGPSNAEYLKTLVFGDGEER
LRKEESKMQDIQRKWVASNRWAVAAQFALAASLASSHSDLLALEAAEGNNILRKTKDAVITLQNVLEGKHNTEIDDTLAQYEVPSDRWWSSLYKVMEGLA
MMSRLGRNRLQQPSYNFENNSSIDWDQM

GO Analysis

1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term vacuole
3
GO Category Biological Process
GO Term transport
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term hydrolase activity
6
GO Category Molecular Function
GO Term transporter activity
7
GO Category Biological Process
GO Term catabolic process
8
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants YES