LOC_Os04g52164

Expression Profile

RGAP LOCUS ID LOC_Os04g52164
RAP-DB ID Os04g0611200
Function transferase family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Cytoplasmic
score 1.725

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Cytoplasm
score 96
confidence value 0.75
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCER2|OsHMS1I
Function assigned as per literature The participation of OsCER2 is required for WSL4 which is involved in VLCFA elongation beyond C22
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27913740
Reference of localization http://www.plantphysiol.org/content/173/2/944.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.105
NLS score -0.47
Protein Sequence >LOC_Os04g52164.1 protein
MVLEGQETPAAAAVHGHRLSTVVPSSVTGEANYDLADADLAYKLHYLRGAYYYPAGDAVRGITIKSLKDPMFPWLDAYFPVAGRIRRAEGDDADAAAARR
PYIKCNDCGVRIVEARCDRALDDWLRDESPDRLRHLCYDKVLGPELFFSPLLYIQVTSFKCGGMALGFSWAHLIGDVASATACFNTWAQILSGKKPAGTV
LEPANKPLDRAPAAAAAAPPRSVKPVGPIEDHWLVPAGRAMAWYSFRVTEPALKKLQSAAGRHAAGTFELVSALLWQAVAKIRAAASKEVTTVTVVRTDM
AARSGKSLANEQRVGYVEAASSPAKTDVAELAAMLAGDKVVDETGAVAAFPGDVVVYGGANLTFVDMEQVAPYELELKGQRPVHVEYGLDGVGEEGAVLV
QPDAGGRGRVVTVVIPRDEVDSLRAALGSTLLLLQDA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Cellular comBiological Processonent
GO Term thylakoid
4
GO Category Biological Process
GO Term metabolic process
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES