LOC_Os04g52130

Expression Profile

RGAP LOCUS ID LOC_Os04g52130
RAP-DB ID Os04g0610800
Function coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 3.037

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.79
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RLIN1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.125
NLS score 0.71
Protein Sequence >LOC_Os04g52130.1 protein
MAPSLLTTPSQALALAPGAAASRVGGGGGGSARVSFPSGRVQRRGALGMRVRASVAIEKETPESEPPPTFLREDGSGAGSGSVRERFEAMIRRVQGEVCA
ALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVNVSVVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHF
NYRYFETDAPKDAPGAPRQWWFGGGTDLTPSYIIEEDVKHFHSVQKQACDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLNFAT
ECADSVVPAYIPIIERRKDTPFTEEHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWQYDHTPEEGTEERKLLDACINPKEWLDL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term extracellular region
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Cellular comBiological Processonent
GO Term plastid
6
GO Category Biological Process
GO Term metabolic process
Presence of Splice variants No