LOC_Os04g51830

Expression Profile

RGAP LOCUS ID LOC_Os04g51830
RAP-DB ID Os04g0607600
Function OsHKT1;4 - Na+ transporter, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 4.509

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.27
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHKT1;4
Function assigned as per literature OsHKT1;4 is involved in Na+ transport in stems and contributes to Na+ exclusion from leaf blades of rice at the reproductive growth stage upon salt stress
Subcellular localization as per literature Plasma membrane, Golgi apparatus (GA) and Endoplasmic reticulum (ER)
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26786707
Reference of localization https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0709-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.094
NLS score -0.22
Protein Sequence >LOC_Os04g51830.1 protein
MPTSRRALAGGALSMHVAYFLAISCLGYGLLGVLKVREPGAAPRRIDRFFTAVSAATVSSMSTVEMEVFSNGQLVVLTVLMLLGGEVFVSLVGLASKWSK
LRSDAMDRSRRVESHGDVALADIDGGDVENPTSSGEEAASRRRPMDADTLRHNAVRALFYIVLAIFAVVHVVGAVAVAAYVLASPGARRTLGDKSLNTWT
FAVFTTVSTFSNCGFMPTNENMVVFKRDAPLQLLLVPQVLAGNTLFAPLLAACVWAAAAATRREELVEMAREGGRAAAAGYAHLMPARRCWMLAATVAAF
VAVLMALVCGMEWGGALQGMSPWEKVVNALFLAVNARHTGESTVDLSILAPAILVLFVLMMYLPPYTTWFPFEENSTTKDSNAENQGIRLLESTLLSQLS
YLTIFVIAICITERRKLKEDPLNFSVLSIVVEVVSAYGNVGFSMGYSCSRQINPDHLCTDKWTGFVGRWSDSGKLILIFVMFFGRLKKFSMKGGKAWKLS

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No