LOC_Os04g51820

Expression Profile

RGAP LOCUS ID LOC_Os04g51820
RAP-DB ID Os04g0607500
Function OsHKT1;1 - Na+ transporter, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 4.442

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.57
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHKT1;1|OsHKT4
Function assigned as per literature plays an important role in restricting Na+ accumulation in aerial parts, in particular, in leaf blades during salinity stress at the reproductive growth stage
Subcellular localization as per literature plasma membrane, ER and Golgi apparartus
Cells used for localization experiment rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26786707
Reference of localization https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0709-4
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.089
NLS score -0.47
Protein Sequence >LOC_Os04g51820.2 protein
MHPPSLVLDTLKRIKLYIAMKLLLPNSEVPRIYWEKAQHLCGFLSMKLISRARCVASSVKQSYSFLVCKSNPLVVQLVYFVIISFAGFLALKNLKPQGKP
GPKDLDLLFTSVSTLTVSSMATVEMEDLSDRQLWVLILLMLMGGEVFTSMLGLYFNNANANRNENSQRSLPSISLDIEFNSPANNGDHKITECGQSEETM
SQNQVQQNKSITYNPCAVLVRIVTGYFVATVISSSVIIIIYFWIDSDARNVLKSKEINMYTFCIFTAVSSFANCGFTPLNSNMQPFRKNWVLLLLVIPQI
LAGNTLFSPLLRLCVWVLGKVSGKAEYAYILQHPGETGYKHLHVRRNSVYIVLSVTGLILLQVMFICSFEWNSESLEGMNWLQKLVGLLFQSVNTRQAGE
SILDISTLSPSTLLLFAVVMYLPSDASFLTANADNQPLTDKKTNSISRALWRNFTVNKLSCLAMFTFLACITERKSISSDPLNFNIFSIVFEIISAFGNV
GYSLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILVMFLGRLKEFILK

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES