LOC_Os04g51700

Expression Profile

RGAP LOCUS ID LOC_Os04g51700
RAP-DB ID Os04g0606450
Function DNA ligase I, ATP-dependent family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 4.698

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLig4|Lig4
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 4
Number of Bipartite 0
Basic residues % 0.141
NLS score 1.89
Protein Sequence >LOC_Os04g51700.1 protein
MNLNDSVTHCIAAEKKDFARHKFPEEIDSYADYFYWDIDISDLKQIFSNMDRAVVDSNMVHHYKKKYCADERFCFFQGCCVYFYHAPLVNADYNVISDLA
LKRVKQDLTMHGGQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEEIEIERSEETVQP
CNDKLEENEKADTSHVKHAPRKRGRPSSSASRTAKPAPRPVRRTRARRGNQHAKIDDVEPEESDHGETGLDDQIPDTDNISKMEVDSFDKDQVSARPVRR
TRARRGKQHAKIDYGQSEESDPGETGQDDQRLDADYISKMEEDSSDRDQGAHPTAPRVVRRSRAQRGKWLAKIDRETGPGETGQDDKKLNADSISKMEEH
AHDKDQEPPPGAQLITLDEQEPKGIKSSTTETPSSPKHERNQTVLRRDTAETTSSATCEKMEQMVDPLHAMLLDMIPSLGQMKTDVGNRVAEAKAETNPP
WVGSSTSSYVAPVPQASASSASSSGVPAPHAGSSTQSTGVPAPDPTAGAPKKKKVSYKDVAGALLKDW

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term DNA metabolic process
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Cellular comBiological Processonent
GO Term cellular_component
6
GO Category Molecular Function
GO Term catalytic activity
7
GO Category Cellular comBiological Processonent
GO Term nucleus
8
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No