LOC_Os04g51400
| RGAP LOCUS ID | LOC_Os04g51400 | ||||
| RAP-DB ID | Os04g0603200 | ||||
| Function | zinc finger, C3HC4 type domain containing protein, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 7 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 4.402 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.79 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 99.66 | ||||
| confidence value | 0.79 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsRMT1 | ||||
| Function assigned as per literature | OsRMT1 may play a relevant role in salt stress response | ||||
| Subcellular localization as per literature | Nucleus and cytoskeleton | ||||
| Cells used for localization experiment | Nicotiana benthamiana leaves | ||||
| NUCLEAR or Not Nuclear | NUCLEAR | ||||
| PMID | 26358044 | ||||
| Reference of localization | https://link.springer.com/article/10.1007%2Fs11103-015-0375-1 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.155 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os04g51400.2 protein MDDHMGRRTVGGLLFTKGGSILLFREDSARHKATNCCTRHGCSSKHLAGKDKQTHRAATAAKEASETPRRSQIFRKPSTRTPQGSTATDNISRNAASSYS ENDNRPRETPGRDLIARLKERVNASRKRSLNRENSPSSPNGLSATSSSSSRTVSRPSHRAASRIRKADEGANAGAVNVRRDSSGDTRRNSDRDVDDFLLV EQAARDSTEGFISGFLARYRSNHQGLLSSLDDSIEDANGYWRFNMEGSEELENYFIFNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLD RSMYMATTSGTHEDCERKCSICQEEYSDGEEVGKMVCKHYYHFSCIKNWLRQKNWCPICKSVALNTN |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | YES | ||||