LOC_Os04g51350
| RGAP LOCUS ID | LOC_Os04g51350 | ||||
| RAP-DB ID | Os04g0602600 | ||||
| Function | pentatricopeptide, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | chlo | ||||
| score | 14 | ||||
2) CELLO Prediction |
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| localization | Mitochondrial | ||||
| score | 1.917 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.05 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 9 | ||||
| confidence value | 0.71 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | MPR25 | ||||
| Function assigned as per literature | MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria | ||||
| Subcellular localization as per literature | mitochondrial matrix | ||||
| Cells used for localization experiment | transgenic rice cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 22747551 | ||||
| Reference of localization | https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2012.05091.x | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.107 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os04g51350.1 protein MSSPRCAVSLPPTAAATTATNGGGGGRRNAQPAAATAASQVKKLCKQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPP VRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALEL FVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAI DLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDL EGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQ PEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQH GFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASC KAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNAALEHKFIEKDQNYVENEHMFSILDGDADS TDRL |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | No | ||||