LOC_Os04g51280

Expression Profile

RGAP LOCUS ID LOC_Os04g51280
RAP-DB ID Os04g0601800
Function DAG protein, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 2.005

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.8
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WSP1
Function assigned as per literature WSP1 protein is involved in chloroplast development
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27622591
Reference of localization https://www.cell.com/molecular-plant/pdf/S1674-2052(16)30190-3.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.157
NLS score -0.13
Protein Sequence >LOC_Os04g51280.1 protein
MATAAAAARAVAAAGRPAQGVPLSRRLTTASSSSARPLRPRGGRAAGSVRCMARRPESSYSPLRSGQGGDRAPTEMAPLFPGCDYEHWLIVMDKPGGEGA
TKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDAENKDYGAELFVNGEIVQRSPERQRRVEPVPQRA
QDRPRYSDRTRYVKRRENQAYQR

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term molecular_function
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No