LOC_Os04g51180

Expression Profile

RGAP LOCUS ID

LOC_Os04g51180

RAP-DB ID

Os04g0600800

Function

GPR89A, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

plas

score

2) CELLO Prediction

localization

PlasmaMembrane

score

4.559

3) NUCPRED Prediction

localization

Non Nuclear

score

0.14

4) Y-Loc Prediction

localization

Chloroplast

score

confidence value

0.18

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

COLD1

Function assigned as per literature

A SNP in COLD1, SNP2, originated from Chinese Oryza rufipogon, is responsible for the ability of COLD(jap/ind) to confer chilling tolerance

Subcellular localization as per literature

ER and Plasma membrane

Cells used for localization experiment

tobacco mesophyll protoplasts

NUCLEAR or Not Nuclear

NOT NUCLEAR

PMID

25728666

Reference of localization

https://www.cell.com/cell/fulltext/S0092-8674(15)00124-5?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867415001245%3Fshowall%3Dtrue

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.105

NLS score

-0.16

Protein Sequence

>LOC_Os04g51180.1 protein
MGWGAVVYGGGVVGASLVGLGWAGLWFLNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLILLLVFVLPYYHCYL
LLRNSGVRRERALLVAALFLLVFLYGFWRMGIHFPMPSPEKGFFTMPQLVSRIGVIGVSVMAVLSGFGAVNLPYSYLSLFIREIDEKDIKTLERQLMQSM
ETCIAKKKKIVLSKMEMERIQGSEEKLKARSFLKRIVGTVVRSVQEDQTEQDIKSLDAEVQALEELSKQLFLEIYELRQAKIAAAFSRTWRGHAQNLLGY
ALSVYCVYKMLKSLQSVVFKEAGSVDPVTMTITIFLRHFDIGIDVTLLSQYISLIFIGMLVVISVRGFLANVMKFFFAVSRVGSGSTTNVVLFLSEIMGM
YFISSILLIRKSLANEYRVIITDVLGGDIQFDFYHRWFDAIFVASAFLSLLLISAQYTSRQTDKHPID

GO Analysis

GO Category	Molecular Function
GO Term	lipid binding

GO Category	Cellular comBiological Processonent
GO Term	cell

GO Category	Biological Process
GO Term	reproduction

GO Category	Biological Process
GO Term	post-embryonic development

GO Category	Biological Process
GO Term	response to endogenous stimulus

GO Category	Molecular Function
GO Term	protein binding

GO Category	Molecular Function
GO Term	nucleotide binding

GO Category	Cellular comBiological Processonent
GO Term	plasma membrane

Presence of Splice variants

YES