LOC_Os04g51000

Expression Profile

RGAP LOCUS ID LOC_Os04g51000
RAP-DB ID Os04g0598300
Function transcription factor FL, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 5

2) CELLO Prediction
localization Nuclear
score 3.089

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Nuclear
score 99.87
confidence value 0.89
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category LFY

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RFL|APO2|SSC
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.134
NLS score 0.99
Protein Sequence >LOC_Os04g51000.1 protein
MDPNDAFSAAHPFRWDLGPPAPAPVPPPPPPPPPPPPANVPRELEELVAGYGVRMSTVARISELGFTASTLLAMTERELDDMMAALAGLFRWDLLLGERF
GLRAALRAERGRLMSLGGRHHGHQSGSTVDGASQEVLSDEHDMAGSGGMGDDDNGRRMVTGKKQAKKGSAARKGKKARRKKVDDLRLDMQEDEMDCCDED
GGGGSESTESSAGGGGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSMAKLHGHKSPTKVTNQVFRYAKKVGASYINKPKMRHYVHC
YALHCLDEEASDALRRAYKARGENVGAWRQACYAPLVDISARHGFDIDAVFAAHPRLAIWYVPTRLRQLCHQARSSHAAAAAALPPPLF

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Molecular Function
GO Term chromatin binding
6
GO Category Biological Process
GO Term flower development
7
GO Category Molecular Function
GO Term protein binding
8
GO Category Biological Process
GO Term cell differentiation
9
GO Category Biological Process
GO Term multicellular organismal development
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
11
GO Category Biological Process
GO Term response to endogenous stimulus
12
GO Category Biological Process
GO Term signal transduction
Presence of Splice variants No